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You know those days when you’re craving something sweet but don’t want to derail your healthy eating habits?
That’s when I whip up a batch of these Greek Yogurt Chocolate Chip Muffins. They’re like a hug in muffin form—comforting, satisfying, and just the right amount of indulgent. Plus, they’re packed with protein thanks to the Greek yogurt, so you can feel good about reaching for one (or two) as a snack or quick breakfast.
Trust me, once you try these, you’ll wonder how you ever lived without them.

Why You’ll Love This Recipe (especially if you’re a Wegovy / Zepbound / GLP-1 User)
- High in Protein: Incorporating Greek yogurt into these muffins boosts their protein content, supporting muscle maintenance and promoting satiety.
- Gentle on Digestion: The use of Greek yogurt and whole wheat flour provides a gentle texture that’s easy on the stomach, making these muffins suitable for those with sensitive digestion.
- Balanced Nutrients: Combining complex carbohydrates from whole wheat flour with the protein in Greek yogurt ensures a steady release of energy without causing blood sugar spikes.
- Lower in Sugar: Sweetened naturally with maple syrup, these muffins have a reduced sugar content compared to traditional recipes, aligning with dietary considerations for GLP-1 users.
Healthy Chocolate Chip Muffins Recipe
INGREDIENTS
- 1 cup plain Greek yogurt
- 1/4 cup coconut oil, melted
- 2 large eggs
- 1 tablespoon vanilla extract
- 1/2 cup pure maple syrup
- 1 1/2 cups whole wheat pastry flour or all-purpose flour
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 1/4 teaspoon salt
- 1 cup mini semi-sweet chocolate chips (if you’d like chocolate chips with no added sugar, try Libby‘s)
INSTRUCTIONS
- Preheat the Oven:
- Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or lightly grease with cooking spray.
- Prepare the Dry Ingredients:
- In a medium bowl, whisk together the flour, baking powder, baking soda, and salt until well combined. Set aside.
- Mix the Wet Ingredients:
- In a large bowl, whisk together the Greek yogurt, melted coconut oil, eggs, vanilla extract, and maple syrup until smooth and well combined.
- Combine Wet and Dry Mixtures:
- Add the dry ingredients to the wet ingredients and gently stir with a spatula until just combined. Be careful not to overmix; a few lumps are fine.
- Fold in Chocolate Chips:
- Gently fold in the mini chocolate chips until evenly distributed throughout the batter.
- Fill the Muffin Tin:
- Divide the batter evenly among the 12 muffin cups, filling each about 3/4 full.
- Bake:
- Place the muffin tin in the preheated oven and bake for 18-22 minutes, or until a toothpick inserted into the center of a muffin comes out clean or with just a few moist crumbs.
- Cool:
- Remove the muffins from the oven and allow them to cool in the tin for about 5 minutes before transferring to a wire rack to cool completely.
Tips for the Chef
- Measuring Coconut Oil: Measure the coconut oil while it’s solid, then melt it. This ensures accurate measurement and consistency in your muffins.
- Avoid Overmixing: To achieve light and fluffy chocolate chip muffins, mix the batter until the ingredients are just combined. Overmixing can lead to dense muffins.
- Storage: Store cooled muffins in an airtight container at room temperature for up to 3 days, or refrigerate for up to a week. They can also be frozen for longer storage; simply thaw at room temperature or warm briefly in the microwave before enjoying.
Nutritional Information (Per Chocolate Chip Muffin):
- Calories: Approximately 200
- Protein: 6g
- Carbohydrates: 28g
- Dietary Fiber: 2g
- Total Sugars: 14g
- Total Fat: 8g
- Saturated Fat: 5g
- Sodium: 150mg
Please note that these values are approximate and can vary based on specific ingredient brands and measurements used.
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Please note: This website contains affiliate links. As an Amazon Associate, we earn from qualifying purchases at no additional cost to you.